STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDA67565.1Hypothetical protein. (921 aa)    
Predicted Functional Partners:
gatC
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
       0.791
SDA85953.1
WD40-like Beta Propeller Repeat.
  
    0.776
SDA89408.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.774
SDA55284.1
Putative ABC exporter.
  
     0.773
SDA55393.1
Hypothetical protein.
  
     0.773
SDA85947.1
C-terminal domain of CHU protein family protein.
  
     0.772
SDA89383.1
Hypothetical protein.
  
     0.771
SDA91864.1
Protein of unknown function.
  
     0.771
SDA67585.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
       0.770
SDA84720.1
Gliding motility associated protien GldN.
  
     0.770
Your Current Organism:
Algoriphagus alkaliphilus
NCBI taxonomy Id: 279824
Other names: A. alkaliphilus, Algoriphagus alkaliphilus (Tiago et al. 2006) Nedashkovskaya et al. 2007 emend. Inan et al. 2015, CIP 108470, Chimaereicella alkaliphila, Chimaereicella alkaliphila Tiago et al. 2006, DSM 22703, LMG 22694, LMG:22694, Sphingobacterium sp. AC74, strain AC-74
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