STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDA78276.1dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family. (382 aa)    
Predicted Functional Partners:
SDA78287.1
UDP-glucose 4-epimerase.
 
  0.836
SDA78219.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
    0.820
SDA78233.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.816
SDA78246.1
Acetyltransferase (isoleucine patch superfamily).
    
  0.811
SDA78205.1
Nucleoside-diphosphate-sugar epimerase.
 
 
  0.803
SDA78191.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.782
SDA78299.1
UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase.
  
 
  0.780
SDA78263.1
Asparagine synthase (glutamine-hydrolysing).
  
    0.775
SDA78316.1
UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase.
  
 0.743
SDA78179.1
Asparagine synthase (glutamine-hydrolysing).
  
    0.693
Your Current Organism:
Algoriphagus alkaliphilus
NCBI taxonomy Id: 279824
Other names: A. alkaliphilus, Algoriphagus alkaliphilus (Tiago et al. 2006) Nedashkovskaya et al. 2007 emend. Inan et al. 2015, CIP 108470, Chimaereicella alkaliphila, Chimaereicella alkaliphila Tiago et al. 2006, DSM 22703, LMG 22694, LMG:22694, Sphingobacterium sp. AC74, strain AC-74
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