STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDA89292.1Rod shape-determining protein MreB. (342 aa)    
Predicted Functional Partners:
SDA89300.1
Rod shape-determining protein MreC.
 
 
 0.990
SDA89315.1
Penicillin-binding protein 2.
 
 
 
 0.961
SDA89323.1
Rod shape determining protein RodA; Belongs to the SEDS family.
 
 
 0.957
SDA89307.1
Hypothetical protein.
       0.792
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
 
 0.778
SDA79353.1
Cell division protein FtsW; Belongs to the SEDS family.
 
 
 0.666
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
 
 
0.640
SDA79402.1
Cell division protein FtsI (penicillin-binding protein 3).
 
 
 
 0.638
secD
SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.615
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
  
    0.600
Your Current Organism:
Algoriphagus alkaliphilus
NCBI taxonomy Id: 279824
Other names: A. alkaliphilus, Algoriphagus alkaliphilus (Tiago et al. 2006) Nedashkovskaya et al. 2007 emend. Inan et al. 2015, CIP 108470, Chimaereicella alkaliphila, Chimaereicella alkaliphila Tiago et al. 2006, DSM 22703, LMG 22694, LMG:22694, Sphingobacterium sp. AC74, strain AC-74
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