STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG23584.1L,D-transpeptidase catalytic domain. (207 aa)    
Predicted Functional Partners:
SHG30686.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
 
     0.479
SHH48762.1
Murein L,D-transpeptidase YcbB/YkuD.
 
   
 0.455
SHH48789.1
Murein L,D-transpeptidase YcbB/YkuD.
 
   
 0.448
Your Current Organism:
Flavobacterium granuli
NCBI taxonomy Id: 280093
Other names: DSM 19729, F. granuli, Flavobacterium granuli Aslam et al. 2005 emend. Kim et al. 2014, IAM 15099, JCM 21560, KCTC 12201, NBRC 102009, strain Kw05
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