STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG75796.1Colicin import membrane protein. (203 aa)    
Predicted Functional Partners:
SHG24787.1
Hypothetical protein.
  
     0.706
SHG61715.1
Thiamine pyrophosphokinase.
  
     0.629
SHG35015.1
Hypothetical protein.
  
     0.612
SHH46278.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.532
SHH28649.1
Hypothetical protein.
  
     0.528
SHH38823.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
  
     0.468
SHG79492.1
Protein of unknown function.
  
     0.436
SHH50201.1
SnoaL-like domain-containing protein.
  
     0.423
SHG49178.1
Hypothetical protein.
  
     0.406
SHH38786.1
Chain length determinant protein.
  
     0.400
Your Current Organism:
Flavobacterium granuli
NCBI taxonomy Id: 280093
Other names: DSM 19729, F. granuli, Flavobacterium granuli Aslam et al. 2005 emend. Kim et al. 2014, IAM 15099, JCM 21560, KCTC 12201, NBRC 102009, strain Kw05
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