STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppA3Unannotated protein. (129 aa)    
Predicted Functional Partners:
BPS1E_0315
Unannotated protein.
     
 0.674
GCA_000940535_00164
Unannotated protein.
       0.647
dagK_1
Unannotated protein.
       0.643
GCA_000940535_00160
Unannotated protein.
     
 0.567
tadB
Unannotated protein.
     
 0.557
BPS1E_0316
Unannotated protein.
     
 0.557
lacR
Unannotated protein.
  
     0.476
GCA_000940535_01714
Unannotated protein.
  
     0.463
Your Current Organism:
Bifidobacterium pseudocatenulatum
NCBI taxonomy Id: 28026
Other names: AS 1.2277, ATCC 27919, B. pseudocatenulatum, BCRC 15476, CCRC 15476, CCRC:15476, CCUG 34989, CIP 104168, DSM 20438, HAMBI 562, LMG 10505, LMG:10505, strain B1279
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.