STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000940535_00228Unannotated protein. (297 aa)    
Predicted Functional Partners:
gntK
Unannotated protein.
   
 0.993
zwf
Unannotated protein; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
 0.962
pgl
Unannotated protein; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
 
  
 0.947
rpiA
Unannotated protein; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
    
 0.910
gnt
Unannotated protein; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
  
 
0.910
rpe
Unannotated protein; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.905
GCA_000940535_00230
Unannotated protein.
 
  
 0.643
GCA_000940535_00229
Unannotated protein.
       0.541
Your Current Organism:
Bifidobacterium pseudocatenulatum
NCBI taxonomy Id: 28026
Other names: AS 1.2277, ATCC 27919, B. pseudocatenulatum, BCRC 15476, CCRC 15476, CCRC:15476, CCUG 34989, CIP 104168, DSM 20438, HAMBI 562, LMG 10505, LMG:10505, strain B1279
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.