STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdsAUnannotated protein. (328 aa)    
Predicted Functional Partners:
plsC2
Unannotated protein.
 
  
 0.961
pgsA_2
Unannotated protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.951
pgsA3
Unannotated protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.951
uppS
Unannotated protein; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
  
 0.935
pgsA_1
Unannotated protein.
    
 0.934
dagK_1
Unannotated protein.
    
 0.907
dagK_2
Unannotated protein.
    
 0.907
pyrH
Unannotated protein; Catalyzes the reversible phosphorylation of UMP to UDP.
 
  
 0.814
rlmN
Unannotated protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.803
frr
Unannotated protein; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
 
  
 0.799
Your Current Organism:
Bifidobacterium pseudocatenulatum
NCBI taxonomy Id: 28026
Other names: AS 1.2277, ATCC 27919, B. pseudocatenulatum, BCRC 15476, CCRC 15476, CCRC:15476, CCUG 34989, CIP 104168, DSM 20438, HAMBI 562, LMG 10505, LMG:10505, strain B1279
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.