Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lpqBLipoprotein LpqB; Derived by automated computational analysis using gene prediction method: Protein Homology. (569 aa)    
Predicted Functional Partners:
APT85900.1
Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.762
APT87762.1
Carbohydrate esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.758
APT86972.1
Arabinofuranosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.755
APT86467.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
APT86975.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
APT85924.1
tRNA adenosine deaminase-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.730
APT86442.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.719
APT86339.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.705
APT86232.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.702
APT87764.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.702
Your Current Organism:
Corynebacterium flavescens
NCBI taxonomy Id: 28028
Other names: ATCC 10340, C. flavescens, CCUG 28791, CIP 69.5, DSM 20296, IFO 14136, LMG 4046, LMG:4046, Microbacterium flavum , Mycobacterium flavum, NBRC 14136, NCCB 42012, NCIB 8707, NCIB:8707, NCIMB 8707
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