STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_00220Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)    
Predicted Functional Partners:
CQ12_08170
NADH-quinone oxidoreductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.687
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
   0.613
CQ12_18260
Geranylgeranyl pyrophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
    
  0.609
CQ12_06980
Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
  
 0.602
CQ12_26455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.602
CQ12_02755
Acetylpolyamine aminohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.577
CQ12_30195
Acetoin utilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.565
CQ12_10300
Threonine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.562
CQ12_04765
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.555
CQ12_22560
Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.553
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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