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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_01110GcrA cell cycle regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)    
Predicted Functional Partners:
CQ12_11335
RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 
 0.812
CQ12_17970
Cobalt chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.694
CQ12_22825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.687
CQ12_18000
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.685
CQ12_36040
Modification methylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family.
  
   
 0.669
hisS
histidine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.638
CQ12_19985
ATP synthase F0 subunit A; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.
  
     0.626
CQ12_34875
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
CQ12_30930
Thiamine monophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
CQ12_37745
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.602
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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