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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_01935Trehalose phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. (278 aa)    
Predicted Functional Partners:
CQ12_01930
Alpha,alpha-trehalose-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
CQ12_08045
1,4-alpha-glucan branching protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.969
CQ12_08030
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.967
CQ12_11190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.920
CQ12_36120
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.862
CQ12_00505
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.840
CQ12_08020
Glucoamylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.840
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
 
 0.826
CQ12_01940
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.807
CQ12_27250
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.744
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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