STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_02275Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (601 aa)    
Predicted Functional Partners:
gfa
Glutathione-dependent formaldehyde-activating protein; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family.
 
  
 0.966
CQ12_02270
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.915
CQ12_02335
Methanol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.857
pqqC
Pyrroloquinoline quinone biosynthesis protein PqqD; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
  
 0.851
CQ12_02310
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.823
CQ12_22235
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.816
CQ12_22230
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.811
CQ12_02345
Quinoprotein dehydrogenase-associated SoxYZ-like carrier; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.808
pqqB
Pyrroloquinoline quinone biosynthesis protein PqqB; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
 
  
 0.798
CQ12_02305
Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.775
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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