STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_04225General secretion pathway protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)    
Predicted Functional Partners:
CQ12_04220
Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.859
CQ12_04230
Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.834
CQ12_04210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.783
CQ12_04235
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.759
CQ12_04260
Exosortase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.759
CQ12_35185
Flagellar basal-body rod protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.
    
   0.627
CQ12_24520
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.593
CQ12_07715
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.576
CQ12_28620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.543
CQ12_12430
Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.507
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.