STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_05440Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)    
Predicted Functional Partners:
CQ12_05435
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.853
CQ12_05445
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.
 
     0.813
CQ12_05450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.677
CQ12_09900
Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.665
CQ12_05455
5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.633
CQ12_31750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.573
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
    
  0.526
CQ12_15825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.481
CQ12_29695
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.464
CQ12_05420
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.445
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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