Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CQ12_06145Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (461 aa)    
Predicted Functional Partners:
CQ12_06150
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.495
gpt
Xanthine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
   
  
 0.475
CQ12_39965
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.465
CQ12_07305
Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.450
CQ12_18130
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.446
CQ12_07940
Ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.443
CQ12_06100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.440
CQ12_24885
Cyclohexadienyl dehydrogenase; Dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.436
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.407
CQ12_07300
Thiamine biosynthesis protein ApbE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.403
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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