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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_08075Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)    
Predicted Functional Partners:
CQ12_08080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.954
CQ12_32250
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
CQ12_32255
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.716
CQ12_28700
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.715
CQ12_23565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.706
CQ12_34450
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.682
CQ12_36635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.673
CQ12_17020
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.668
CQ12_34435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.651
murD-2
Uncharacterized protein; UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.635
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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