STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_09905Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)    
Predicted Functional Partners:
CQ12_11865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.575
CQ12_29520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.575
CQ12_15330
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.547
CQ12_09900
Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.508
CQ12_00025
Mannose-1-phosphate guanyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.437
CQ12_02320
Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.437
CQ12_12120
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.437
CQ12_16840
Nodulation protein NodJ; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit encodes the transporter.
   
  
 0.437
CQ12_25955
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.437
CQ12_01900
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.401
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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