STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ntrCNitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (480 aa)    
Predicted Functional Partners:
CQ12_10820
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.998
CQ12_10090
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.954
CQ12_28515
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.899
CQ12_36120
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.887
CQ12_10830
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.822
CQ12_03090
Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.816
CQ12_10815
Dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
     
 0.802
CQ12_19785
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.802
CQ12_19460
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.791
CQ12_06960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.720
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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