STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_10905Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)    
Predicted Functional Partners:
CQ12_08170
NADH-quinone oxidoreductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.951
CQ12_28540
Calcium sensor EFh; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.949
CQ12_08955
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.941
CQ12_27075
Cytochrome C; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 0.938
CQ12_35040
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.892
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 0.886
CQ12_11565
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.835
CQ12_15470
Guanylyl cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.835
CQ12_23890
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.835
CQ12_16595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.829
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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