STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_11690AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)    
Predicted Functional Partners:
CQ12_11695
Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.717
CQ12_07735
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.640
CQ12_38555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.573
CQ12_11335
RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.562
CQ12_24440
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.562
CQ12_31940
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.540
CQ12_06975
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.518
CQ12_06955
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.506
CQ12_23470
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.491
CQ12_28055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.466
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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