STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_13910Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (418 aa)    
Predicted Functional Partners:
CQ12_13905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
CQ12_13900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.581
CQ12_13880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.542
gpt
Xanthine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
  
    0.504
CQ12_18130
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.477
CQ12_40265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
CQ12_24885
Cyclohexadienyl dehydrogenase; Dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.454
CQ12_13885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
CQ12_13890
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
CQ12_13895
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.