Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CQ12_155002Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)    
Predicted Functional Partners:
CQ12_15495
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.934
CQ12_15490
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.925
CQ12_23860
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.873
CQ12_17710
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.811
CQ12_17715
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.803
CQ12_14600
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 
 0.791
CQ12_18610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.788
CQ12_18455
Nitrogen fixation protein NifE; Functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifD/NifK/NifE/NifN family.
  
 
 0.779
CQ12_33915
Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
  
 0.744
CQ12_14610
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 
 0.736
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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