STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_16455Sugar phosphate permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)    
Predicted Functional Partners:
CQ12_16450
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.553
CQ12_16580
Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.550
CQ12_26885
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.479
CQ12_12315
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.460
CQ12_21300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.458
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
  
 0.453
CQ12_10280
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.448
CQ12_07460
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.412
CQ12_11270
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.409
CQ12_32050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.408
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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