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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_18320Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. (519 aa)    
Predicted Functional Partners:
CQ12_18315
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.976
CQ12_31900
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.890
CQ12_27325
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.888
CQ12_06915
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.884
CQ12_18310
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.859
CQ12_39660
Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.761
CQ12_21890
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.651
CQ12_16535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.624
CQ12_16595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.569
fur
Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.
       0.525
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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