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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_19675Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)    
Predicted Functional Partners:
CQ12_19680
RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.934
CQ12_26695
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.551
CQ12_39815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
CQ12_13535
RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.533
CQ12_09600
Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.521
CQ12_20780
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.520
CQ12_11270
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.503
CQ12_25665
FkbM family methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.494
CQ12_04035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.493
CQ12_40705
Photosystem reaction center subunit H; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.486
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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