Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CQ12_20125CoxF protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (54 aa)    
Predicted Functional Partners:
ctaG
Cytochrome C oxidase assembly protein; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
       0.833
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.823
CQ12_20280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.761
CQ12_28960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.740
CQ12_22755
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.722
CQ12_14870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.704
CQ12_31225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.685
CQ12_06480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.673
CQ12_36130
Organic solvent tolerance protein OstA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
CQ12_20115
Cytochrome B562; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.646
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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