STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_206301,4-butanediol diacrylate esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)    
Predicted Functional Partners:
CQ12_07245
Cyclohexanone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.742
CQ12_12565
1,4-butanediol diacrylate esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.678
CQ12_20635
Cyclohexanone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.645
CQ12_37175
Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.496
CQ12_24345
Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
anmK
anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
 
  
  0.411
CQ12_16595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.411
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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