Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
CQ12_21075Phosphonate monoester hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)    
Predicted Functional Partners:
CQ12_06995
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.628
CQ12_21545
Heparinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.585
CQ12_13330
Choline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.562
CQ12_14470
Choline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.562
CQ12_24385
Glucose-methanol-choline oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.562
CQ12_30115
Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.562
CQ12_30555
Choline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.562
CQ12_39735
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.562
CQ12_11725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
CQ12_17920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.491
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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