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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_22545ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (683 aa)    
Predicted Functional Partners:
CQ12_15910
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.900
CQ12_02205
Rubsico expression protein CbbX; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.828
recA
DNA recombination/repair protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
   0.654
CQ12_22550
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.507
CQ12_10315
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.487
CQ12_10325
Sulfate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.480
CQ12_29275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.480
CQ12_22540
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.437
CQ12_16595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.420
CQ12_19015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.404
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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