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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_228552'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (178 aa)    
Predicted Functional Partners:
CQ12_22860
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.541
CQ12_22850
acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.536
CQ12_08860
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
bioD
Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
  
 0.454
CQ12_27200
Metallophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.453
CQ12_22840
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.446
CQ12_22845
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.446
CQ12_17930
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.433
CQ12_29850
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.429
CQ12_27195
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.416
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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