STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_23200Peptidase S16; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)    
Predicted Functional Partners:
CQ12_38920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.845
CQ12_24080
Adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.842
CQ12_34275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.842
CQ12_28260
DNA ligase-associated DEXH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.826
CQ12_23205
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.716
CQ12_35040
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.590
CQ12_23120
Hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.491
CQ12_20370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.488
CQ12_03190
Cytosolic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
CQ12_00815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.428
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.