STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_23405Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)    
Predicted Functional Partners:
CQ12_06425
Phosphoglycerol transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.650
CQ12_06430
Phosphoglycerol transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.647
CQ12_40540
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.540
CQ12_23415
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.532
CQ12_31265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.474
CQ12_33525
Abortive infection protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
CQ12_23410
3-phosphoglycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.455
CQ12_29385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.444
CQ12_26900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.433
CQ12_31015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.