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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_23930N-formylglutamate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)    
Predicted Functional Partners:
hutI
Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.944
CQ12_02120
N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.932
CQ12_23860
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.881
CQ12_09845
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.831
CQ12_39640
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.831
CQ12_07235
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.683
CQ12_07205
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.661
CQ12_02125
Histidine utilization repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.630
CQ12_22325
HTH gntR-type domain-containing protein; Catalyzes the cycloisomerization of cis,cis-muconate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.630
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.604
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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