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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_24835MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)    
Predicted Functional Partners:
CQ12_19785
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.973
CQ12_28515
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.954
CQ12_10090
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.942
CQ12_23935
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.894
CQ12_36680
Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.893
fliM
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
 0.890
CQ12_03090
Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.867
CQ12_40875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.859
CQ12_22925
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.851
CQ12_06960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.847
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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