Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CQ12_25930FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)    
Predicted Functional Partners:
CQ12_13270
Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.911
CQ12_39290
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.872
CQ12_30525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.835
CQ12_34845
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.781
CQ12_25935
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.724
CQ12_01645
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.723
CQ12_13265
Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.718
CQ12_35110
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.709
CQ12_18260
Geranylgeranyl pyrophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
  
 
 0.691
CQ12_21955
Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
  0.684
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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