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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_25930FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)    
Predicted Functional Partners:
CQ12_13270
Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.894
CQ12_39290
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.847
CQ12_13265
Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.835
CQ12_30525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.786
CQ12_34845
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.719
CQ12_25935
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.718
CQ12_18260
Geranylgeranyl pyrophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
  
 
 0.712
CQ12_01645
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.711
CQ12_13275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.685
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
 
 
 0.671
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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