STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_26870CadC-family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)    
Predicted Functional Partners:
CQ12_28515
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.950
CQ12_01070
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
    
  0.885
CQ12_23890
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.832
CQ12_11565
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.831
CQ12_15470
Guanylyl cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.824
CQ12_41375
TPR_REGION domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.800
CQ12_38850
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.783
CQ12_33445
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.781
ndk
Phosphodiesterase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
 
 
  0.778
CQ12_21815
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.778
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.