STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ12_29560Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)    
Predicted Functional Partners:
CQ12_29645
Reactive intermediate/imine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
CQ12_34395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
CQ12_36440
Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.768
CQ12_10300
Threonine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.667
CQ12_29565
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.602
CQ12_34520
Pyridoxal-5'-phosphate-dependent protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.557
CQ12_37620
Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.551
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
    
  0.486
CQ12_23505
Elongation factor G; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.486
CQ12_35990
Serine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.483
Your Current Organism:
Bradyrhizobium jicamae
NCBI taxonomy Id: 280332
Other names: B. jicamae, Bradyrhizobium jicamae Ramirez-Bahena et al. 2009, Bradyrhizobium sp. PAC68, Bradyrhizobium sp. PAC683, Bradyrhizobium sp. PAC684, CECT 7395, LMG 24556, LMG:24556, strain PAC68
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