Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GU90_00570Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)    
Predicted Functional Partners:
GU90_15985
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.805
GU90_11065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.774
GU90_04465
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
GU90_04460
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
GU90_04470
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
GU90_17725
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.764
GU90_03265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.762
GU90_16205
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.758
GU90_05960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
GU90_15610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
Your Current Organism:
Saccharopolyspora rectivirgula
NCBI taxonomy Id: 28042
Other names: ATCC 33515, DSM 43747, Faenia rectivirgula, IFO 12464, INMI 683, JCM 3057, Micropolyspora faeni, Micropolyspora rectivirgula, NBRC 12464, NRRL B-16280, S. rectivirgula, Thermopolyspora polyspora, Thermopolyspora rectivirgula, VKM Ac-810
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