Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
GU90_013202Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)    
Predicted Functional Partners:
GU90_01315
Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.985
GU90_01310
Ubiquinone biosynthesis methyltransferase UbiE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.954
GU90_02110
Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.951
GU90_01305
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.950
GU90_01300
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.940
GU90_12605
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.937
GU90_12650
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.884
GU90_10325
Sarcosine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family.
  
 
  0.867
GU90_07100
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.854
GU90_07560
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.592
Your Current Organism:
Saccharopolyspora rectivirgula
NCBI taxonomy Id: 28042
Other names: ATCC 33515, DSM 43747, Faenia rectivirgula, IFO 12464, INMI 683, JCM 3057, Micropolyspora faeni, Micropolyspora rectivirgula, NBRC 12464, NRRL B-16280, S. rectivirgula, Thermopolyspora polyspora, Thermopolyspora rectivirgula, VKM Ac-810
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