Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GU90_01765Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)    
Predicted Functional Partners:
GU90_16910
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.871
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
  0.848
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.836
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.786
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.742
GU90_06765
5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.712
GU90_14075
Inositol-3-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.690
GU90_11235
Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.614
GU90_08835
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.611
GU90_04635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.588
Your Current Organism:
Saccharopolyspora rectivirgula
NCBI taxonomy Id: 28042
Other names: ATCC 33515, DSM 43747, Faenia rectivirgula, IFO 12464, INMI 683, JCM 3057, Micropolyspora faeni, Micropolyspora rectivirgula, NBRC 12464, NRRL B-16280, S. rectivirgula, Thermopolyspora polyspora, Thermopolyspora rectivirgula, VKM Ac-810
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