GU90_02865 protein (Saccharopolyspora rectivirgula)

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

GU90_02865

ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)

Predicted Functional Partners:

GU90_02850

0.999

GU90_02860

0.998

GU90_02855

0.941

GU90_02870

0.776

GU90_04140

0.720

GU90_02875

0.425

Your Current Organism:

Saccharopolyspora rectivirgula

NCBI taxonomy Id: 28042
Other names: ATCC 33515, DSM 43747, Faenia rectivirgula, IFO 12464, INMI 683, JCM 3057, Micropolyspora faeni, Micropolyspora rectivirgula, NBRC 12464, NRRL B-16280, S. rectivirgula, Thermopolyspora polyspora, Thermopolyspora rectivirgula, VKM Ac-810

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Network Stats

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Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006094

Gluconeogenesis

3 of 29

2.38

2.19

7.07e-05

GO:0044283

Small molecule biosynthetic process

8 of 672

1.44

2.18

5.43e-08

GO:1901607

Alpha-amino acid biosynthetic process

5 of 201

1.76

2.17

1.04e-05

GO:0006096

Glycolytic process

4 of 108

1.94

2.03

6.07e-05

GO:0019284

L-methionine salvage from S-adenosylmethionine

2 of 3

3.19

2.02

0.00023

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016860

Intramolecular oxidoreductase activity

5 of 69

2.23

3.34

1.72e-07

GO:0004347

glucose-6-phosphate isomerase activity

3 of 3

3.37

3.26

1.28e-06

GO:0046570

Methylthioribulose 1-phosphate dehydratase activity

2 of 2

3.37

1.86

0.00044

GO:0043874

Acireductone synthase activity

2 of 2

3.37

1.86

0.00044

GO:0043716

2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity

2 of 2

3.37

1.86

0.00044

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:13634

L-serine biosynthetic process

3 of 11

2.8

2.33

5.40e-05

CL:13538

Mixed, incl. One carbon pool by folate, and De novo IMP biosynthetic process

4 of 59

2.2

2.19

5.40e-05

CL:14077

L-methionine salvage from S-adenosylmethionine, and S-methyl-5-thioribose kinase activity

2 of 5

2.97

1.3

0.0044

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

pda00030

Pentose phosphate pathway

2 of 70

1.82

0.76

0.0346

pda01200

Carbon metabolism

3 of 304

1.36

0.67

0.0346

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-70171

Glycolysis

4 of 86

2.04

2.17

3.83e-05

MAP-70326

Glucose metabolism

4 of 132

1.85

1.88

0.00010

MAP-70263

Gluconeogenesis

3 of 93

1.88

1.32

0.0023

MAP-977347

Serine biosynthesis

2 of 16

2.46

1.29

0.0043

MAP-5628897

TP53 Regulates Metabolic Genes

3 of 144

1.69

1.14

0.0043

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0312

Gluconeogenesis

2 of 2

3.37

1.94

0.00032

KW-0324

Glycolysis

2 of 47

2.0

0.8

0.0309

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00342

Phosphoglucose isomerase

2 of 2

3.37

1.48

0.0022

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node1	node2	node1 annotation	node2 annotation	score
GU90_02850	GU90_02855	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
GU90_02850	GU90_02860	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
GU90_02850	GU90_02865	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
GU90_02850	GU90_02870	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	0.586
GU90_02855	GU90_02850	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
GU90_02855	GU90_02860	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
GU90_02855	GU90_02865	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
GU90_02855	GU90_02870	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	0.644
GU90_02860	GU90_02850	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
GU90_02860	GU90_02855	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
GU90_02860	GU90_02865	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
GU90_02860	GU90_02870	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	0.655
GU90_02865	GU90_02850	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
GU90_02865	GU90_02855	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
GU90_02865	GU90_02860	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
GU90_02865	GU90_02870	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	0.776
GU90_02865	GU90_02875	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	0.425
GU90_02865	GU90_04140	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
GU90_02870	GU90_02850	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
GU90_02870	GU90_02855	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644