Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GU90_03300Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)    
Predicted Functional Partners:
GU90_11230
Galactokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GHMP kinase family. GalK subfamily.
  
 0.899
GU90_07825
Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.657
GU90_04970
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.647
GU90_10360
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
  
 
 0.643
GU90_01745
Polyphosphate glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.635
GU90_11000
Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.635
GU90_03700
Galactose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.609
GU90_01340
Glycoside hydrolase family 3; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.606
GU90_00945
ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.584
GU90_03295
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.581
Your Current Organism:
Saccharopolyspora rectivirgula
NCBI taxonomy Id: 28042
Other names: ATCC 33515, DSM 43747, Faenia rectivirgula, IFO 12464, INMI 683, JCM 3057, Micropolyspora faeni, Micropolyspora rectivirgula, NBRC 12464, NRRL B-16280, S. rectivirgula, Thermopolyspora polyspora, Thermopolyspora rectivirgula, VKM Ac-810
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