Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GU90_06005Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)    
Predicted Functional Partners:
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
   
   0.766
GU90_16965
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.766
GU90_05755
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.683
GU90_17750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.590
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.548
GU90_18810
Phage repressor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.541
GU90_12000
ADP-ribosylglycohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.530
GU90_05700
NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
    0.515
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.494
GU90_15815
ADP-ribosylglycohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.488
Your Current Organism:
Saccharopolyspora rectivirgula
NCBI taxonomy Id: 28042
Other names: ATCC 33515, DSM 43747, Faenia rectivirgula, IFO 12464, INMI 683, JCM 3057, Micropolyspora faeni, Micropolyspora rectivirgula, NBRC 12464, NRRL B-16280, S. rectivirgula, Thermopolyspora polyspora, Thermopolyspora rectivirgula, VKM Ac-810
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