Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GU90_07830Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (605 aa)    
Predicted Functional Partners:
GU90_02010
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.780
GU90_07825
Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.701
GU90_01340
Glycoside hydrolase family 3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.691
GU90_02970
beta-N-acetylglucosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.554
GU90_10440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.554
GU90_11230
Galactokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.551
GU90_07820
Haloalkane dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.520
GU90_00945
ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.498
GU90_07835
AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.489
Your Current Organism:
Saccharopolyspora rectivirgula
NCBI taxonomy Id: 28042
Other names: ATCC 33515, DSM 43747, Faenia rectivirgula, IFO 12464, INMI 683, JCM 3057, Micropolyspora faeni, Micropolyspora rectivirgula, NBRC 12464, NRRL B-16280, S. rectivirgula, Thermopolyspora polyspora, Thermopolyspora rectivirgula, VKM Ac-810
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