Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GU90_08710GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)    
Predicted Functional Partners:
GU90_00250
Gamma-glutamyl cyclotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.709
GU90_10980
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.653
GU90_08705
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.594
GU90_17345
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.585
GU90_16930
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.534
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.517
GU90_06050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
GU90_11665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
GU90_11725
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
GU90_05195
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.440
Your Current Organism:
Saccharopolyspora rectivirgula
NCBI taxonomy Id: 28042
Other names: ATCC 33515, DSM 43747, Faenia rectivirgula, IFO 12464, INMI 683, JCM 3057, Micropolyspora faeni, Micropolyspora rectivirgula, NBRC 12464, NRRL B-16280, S. rectivirgula, Thermopolyspora polyspora, Thermopolyspora rectivirgula, VKM Ac-810
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