Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
GU90_09005Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)    
Predicted Functional Partners:
GU90_01340
Glycoside hydrolase family 3; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.643
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
  0.586
GU90_00940
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.440
GU90_02075
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.440
GU90_08495
Hydrolase GDSL; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.440
GU90_13665
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.440
GU90_15825
SGNH hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.440
Your Current Organism:
Saccharopolyspora rectivirgula
NCBI taxonomy Id: 28042
Other names: ATCC 33515, DSM 43747, Faenia rectivirgula, IFO 12464, INMI 683, JCM 3057, Micropolyspora faeni, Micropolyspora rectivirgula, NBRC 12464, NRRL B-16280, S. rectivirgula, Thermopolyspora polyspora, Thermopolyspora rectivirgula, VKM Ac-810
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