STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GU90_09565Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)    
Predicted Functional Partners:
GU90_08695
Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.
 
 
 0.957
GU90_09560
DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.719
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 0.713
GU90_09570
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.596
GU90_00405
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.548
GU90_04915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.543
GU90_04460
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.511
GU90_08690
Chromosome partitioning protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  
0.502
GU90_13765
acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.489
GU90_02250
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.485
Your Current Organism:
Saccharopolyspora rectivirgula
NCBI taxonomy Id: 28042
Other names: ATCC 33515, DSM 43747, Faenia rectivirgula, IFO 12464, INMI 683, JCM 3057, Micropolyspora faeni, Micropolyspora rectivirgula, NBRC 12464, NRRL B-16280, S. rectivirgula, Thermopolyspora polyspora, Thermopolyspora rectivirgula, VKM Ac-810
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