Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GU90_09800Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)    
Predicted Functional Partners:
GU90_09805
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.977
GU90_09810
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.949
GU90_09820
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.889
GU90_17145
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.878
GU90_13325
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.874
GU90_09815
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
  0.873
GU90_06535
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.870
GU90_13320
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.867
GU90_15025
Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.862
GU90_17150
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.854
Your Current Organism:
Saccharopolyspora rectivirgula
NCBI taxonomy Id: 28042
Other names: ATCC 33515, DSM 43747, Faenia rectivirgula, IFO 12464, INMI 683, JCM 3057, Micropolyspora faeni, Micropolyspora rectivirgula, NBRC 12464, NRRL B-16280, S. rectivirgula, Thermopolyspora polyspora, Thermopolyspora rectivirgula, VKM Ac-810
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