STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GU90_10615CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)    
Predicted Functional Partners:
GU90_10610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.737
GU90_02840
Recombinase RecB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
arcA
Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.575
GU90_16285
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.
 
     0.538
GU90_14300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.499
GU90_04425
Zn-ribbon protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.484
GU90_05750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.476
GU90_11295
SAM-dependent methlyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methyltransferase superfamily.
  
     0.472
GU90_04915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
GU90_06360
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
Your Current Organism:
Saccharopolyspora rectivirgula
NCBI taxonomy Id: 28042
Other names: ATCC 33515, DSM 43747, Faenia rectivirgula, IFO 12464, INMI 683, JCM 3057, Micropolyspora faeni, Micropolyspora rectivirgula, NBRC 12464, NRRL B-16280, S. rectivirgula, Thermopolyspora polyspora, Thermopolyspora rectivirgula, VKM Ac-810
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.